Zijie Qiu

Enabling Thinking, Reflecting and Chain-of-Thought Reasoning with Biological Sequences

Inference-Time Alignment Control for Diffusion Models with Reinforcement Learning Guidance

Curriculum Learning for Biological Sequence Prediction: The Case of De Novo Peptide Sequencing

Retrieval is Not Enough: Enhancing RAG through Test-Time Critique and Optimization

Bidirectional Representations Augmented Autoregressive Biological Sequence Generation: Application in De Novo Peptide Sequencing

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing

RankNovo: A Universal Reranking Approach for Robust De Novo Peptide Sequencing

Distilling Non-Autoregressive Model Knowledge for Autoregressive De Novo Peptide Sequencing